Tetsurou Hoshino is a boy bent on obtaining an immortal mechanical body in order to take revenge against his mother's murderer, the machine man Count Mecha. However, due to the incredible cost of obtaining what he seeks, his only hope is to steal a boarding pass for the Galaxy Express 999, a space train that travels across the galaxy and whose final stop is a planet where the metal replacements are provided for free. After swiping a pass, Tetsurou is pursued by the police and ends up collapsing into the arms of a mysterious woman named Maetel, who closely resembles his mother. Once he awakens, she tells the boy that she will provide him entry onto the 999 as long as he agrees to travel with her. Accepting her proposition, Tetsurou boards the cosmic railway with Maetel and begins a journey across the galaxy.

In the distant future, humanity has found a way to live forever by purchasing mechanical bodies, but this way to immortality is extraordinarily expensive. An impoverished boy, Tetsurou Hoshino, desires to purchase a pass on the Galaxy Express 999—a train that travels throughout the universe—because it is said that at the end of the line, those aboard can obtain a mechanical body for free. When Tetsurou's mother is gunned down by the villainous machine-man hybrid Count Mecha, however, all seems lost. Tetsurou is then saved from certain death by the mysterious Maetel, a tall woman with blonde hair and a striking resemblance to his mother. She gives him a pass to the Galaxy Express under one condition: that they travel together. Thus, Tetsurou begins his journey across the universe to many unique planets and thrilling adventures, in hopes of being able to attain that which he most desires.

A remake of episode 22 of the TV version.

Based on the story by manga master Leiji Matsumoto (The Cockpit, Queen Emeraldas), the 55 minute featurette picks up one year after the events of Galaxy Express 999 in which a young boy named Tetsuro and his motherly companion Maetel worked to rid the universe on the Mechanized Empire who had taken over Earth.

This short movie is a remake of the first half of episode 3 of Ginga Tetsudou 999.

A remake of episodes 51-52 of the TV version.

A remake of episodes 12-13 of the TV version.

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Giovanni is a young boy who lives on the outskirts of a small rustic village. His mother is bedridden and his father has not returned home since leaving to work on a fishing boat. An outcast at school, Giovanni has only one friend: Campanella, the mayor's son. During the town's Festival of Stars, Giovanni starts to daydream atop a hill and looks up to find a steam engine train floating in the air. He boards the train only to find his friend Campanella already there. And so, the two begin their journey through the stars where they come across unusual people and visit many beautiful and haunting places.

Makoto is the fifteenth generation heiress of a small shrine to the god Inari. Her father is still the shrine’s priest, but Inari’s divine messenger, Gintarou, has appeared to Makoto, marking her as true successor. Gintarou has the ability to see a short distance into the future and to find lost objects, but is unmotivated and foulmouthed. In spite of this, he becomes friends with Makoto, and together they help those who come to the shrine.

AD 3567. Mankind has lost its once great civilization, now living in the ruins of the aftermath. But even though their lives are threatened by Gardeners — mysterious unmanned mobile weapons (of different ranks) sent from the Moon — brave teenagers have to become Gardener hunters to earn their living. And although human civilization at large lies in ruins due to high-tech maintenance free technology, some parts of the remaining cities still work in limited ways, supporting the humans living there. One fateful day Tokito Aizawa meets Tea, awakening a power older and beyond that of the Gardeners, and inadvertently opening up the door to a possibly much brighter future for the remainder of mankind...

Kananase Yu is just an ordinary high-school student. Since he has mysterious inside knowledge about piloting a mecha, he is recruited by the International Military Organization as a potential test pilot for a new mobile armor. However, apparently there are other young recruits around his age, including one of his classmates, were recruited as test pilot as well. Now Kananase Yu must prove that he is the best to be the test pilot.